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on Jul 24, 2015 16:11.

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h2. Analyzing Molecular Networking Output

After completing a [Molecular Networking|Molecular Networking Documentation] workflow utilizing GNPS, analysis can be done within the web interface. Documentation for complementary data analysis using Cytoscape, is available [here|Cytoscape 2.8.X Analysis Documentation].

The GNPS web interface provides a quick and easy way to perform initial analysis of your data particularly if you want to easily view the MS2 spectra of the nodes/clusters generated by the Molecular Networking workflow.