compared with
Current by Louis Felix Nothias
on Sep 07, 2017 20:12.

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Separate documentation is available for both [Molecular Networking Analysis|https://bix-lab.ucsd.edu/display/Public/Molecular+Networking+Analysis+Documentation] and [Cytoscape 2.8|https://bix-lab.ucsd.edu/display/Public/Cytoscape+2.8.X+Visualization+and+Analysis+Documentation] and [Cytoscape 3.2|https://bix-lab.ucsd.edu/display/Public/Cytoscape+3.2.X+Visualization+and+Analysis+Documentation]




h3. Citation




If you use MS-Cluster in your molecular networks, cite the following also: Frank, Ari M., et al. "Clustering millions of tandem mass spectra." Journal of proteome research 7.01 (2007): 113-122. [http://pubs.acs.org/doi/abs/10.1021/pr070361e|http://pubs.acs.org/doi/abs/10.1021/pr070361e]




h3. Data Analysis on GNPS

h3. Metadata table in GNPS

The metadata file describes the samples properties and allows more flexibility for data analysis and visualization than selecting data input files within the workflow of GNPS (G1, G2, etc).

*Metadata table*. [More information here|https://bix-lab.ucsd.edu/display/Public/Metadata+table+in+GNPS#MetadatatableinGNPS-MetadatatableinGNPS] \[Recommended format\].



h5. Analysis in GNPS